This paper presents a study on learning the behavior of linear dynamical systems on a network using a graph neural network model, considering the characteristics of information propagation (diffusion, weak localization, and strong localization) in complex systems. We develop a graph convolution and attention-based neural network framework to identify the steady-state behavior of linear dynamical systems and demonstrate that the trained model discriminates between different states with high accuracy. We evaluate model performance using real-world data and provide analytical derivations of the framework's forward and backward propagation to enhance the model's explainability.