To overcome the challenges of traditional groundwater monitoring (lack of data, computational constraints, delayed results), we developed a machine learning pipeline that processes climate data, hydrometeorological records, and topographic features using AutoGluon’s automatic ensemble framework. Applied to a large dataset from France (>3,440,000 observations from >1,500 wells), we achieved a weighted F_1 score of 0.927 for validation data and 0.67 for temporally separated test data. Scenario-based assessments demonstrate its practical utility for early warning systems and water allocation decisions under climate change conditions. The open source implementation provides a scalable framework to integrate machine learning into national groundwater monitoring networks, enabling more rapid and data-driven water management strategies.