Daily Arxiv

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PRIX: Learning to Plan from Raw Pixels for End-to-End Autonomous Driving

Swin-TUNA : A Novel PEFT Approach for Accurate Food Image Segmentation

EarthLink: A Self-Evolving AI Agent for Climate Science

Reality Proxy: Fluid Interactions with Real-World Objects in MR via Abstract Representations

Leveraging multi-source and heterogeneous signals for fatigue detection

Segmentation-free Goodness of Pronunciation

Adaptive Relative Pose Estimation Framework with Dual Noise Tuning for Safe Approaching Maneuvers

Compositional Coordination for Multi-Robot Teams with Large Language Models

Diffusion Beats Autoregressive in Data-Constrained Settings

The New LLM Bottleneck: A Systems Perspective on Latent Attention and Mixture-of-Experts

EndoControlMag: Robust Endoscopic Vascular Motion Magnification with Periodic Reference Resetting and Hierarchical Tissue-aware Dual-Mask Control

Long-Short Distance Graph Neural Networks and Improved Curriculum Learning for Emotion Recognition in Conversation

Omni-Thinker: Scaling Cross-Domain Generalization in LLMs via Multi-Task RL with Hybrid Rewards

GCC-Spam: Spam Detection via GAN, Contrastive Learning, and Character Similarity Networks

SDSC:A Structure-Aware Metric for Semantic Signal Representation Learning

Multilingual LLMs Are Not Multilingual Thinkers: Evidence from Hindi Analogy Evaluation

Frequency-Dynamic Attention Modulation for Dense Prediction

A Survey of Deep Learning for Geometry Problem Solving

EEG Foundation Models: A Critical Review of Current Progress and Future Directions

Inversion-DPO: Precise and Efficient Post-Training for Diffusion Models

A PBN-RL-XAI Framework for Discovering a "Hit-and-Run" Therapeutic Strategy in Melanoma

Task Priors: Enhancing Model Evaluation by Considering the Entire Space of Downstream Tasks

OrQstrator: An AI-Powered Framework for Advanced Quantum Circuit Optimization

A comprehensive study of LLM-based argument classification: from LLAMA through GPT-4o to Deepseek-R1

Mechanistic Indicators of Understanding in Large Language Models

Scaling RL to Long Videos

Fast Bilateral Teleoperation and Imitation Learning Using Sensorless Force Control via Accurate Dynamics Model

Masked Autoencoders that Feel the Heart: Unveiling Simplicity Bias for ECG Analyses

SyncMapV2: Robust and Adaptive Unsupervised Segmentation

LLM Web Dynamics: Tracing Model Collapse in a Network of LLMs

Why Do Class-Dependent Evaluation Effects Occur with Time Series Feature Attributions? A Synthetic Data Investigation

Diffuse and Disperse: Image Generation with Representation Regularization

LLM-D12: A Dual-Dimensional Scale of Instrumental and Relational Dependencies on Large Language Models

MambaNeXt-YOLO: A Hybrid State Space Model for Real-time Object Detection

PALADIN : Robust Neural Fingerprinting for Text-to-Image Diffusion Models

Outcome-Based Online Reinforcement Learning: Algorithms and Fundamental Limits

Machine Learning Solutions Integrated in an IoT Healthcare Platform for Heart Failure Risk Stratification

Beyond Low-rank Decomposition: A Shortcut Approach for Efficient On-Device Learning

Vision Transformers in Precision Agriculture: A Comprehensive Survey

PerceptionLM: Open-Access Data and Models for Detailed Visual Understanding

Position: An Empirically Grounded Identifiability Theory Will Accelerate Self-Supervised Learning Research

LagKV: Lag-Relative Information of the KV Cache Tells Which Tokens Are Important

Trigger without Trace: Towards Stealthy Backdoor Attack on Text-to-Image Diffusion Models

Sparse Logit Sampling: Accelerating Knowledge Distillation in LLMs

Aligning Vision to Language: Annotation-Free Multimodal Knowledge Graph Construction for Enhanced LLMs Reasoning

Att-Adapter: A Robust and Precise Domain-Specific Multi-Attributes T2I Diffusion Adapter via Conditional Variational Autoencoder

When Large Vision-Language Model Meets Large Remote Sensing Imagery: Coarse-to-Fine Text-Guided Token Pruning

Robust Multi-View Learning via Representation Fusion of Sample-Level Attention and Alignment of Simulated Perturbation

Tackling Hallucination from Conditional Models for Medical Image Reconstruction with DynamicDPS

Quantum Machine Learning in Precision Medicine and Drug Discovery -- A Game Changer for Tailored Treatments?

A general language model for peptide identification

ExpliCa: Evaluating Explicit Causal Reasoning in Large Language Models

EVEv2: Improved Baselines for Encoder-Free Vision-Language Models

LLM Alignment as Retriever Optimization: An Information Retrieval Perspective

Pulse-PPG: An Open-Source Field-Trained PPG Foundation Model for Wearable Applications Across Lab and Field Settings

Online Housing Market

Integrated Learning and Optimization for Congestion Management and Profit Maximization in Real-Time Electricity Market

Integrating Evidence into the Design of XAI and AI-based Decision Support Systems: A Means-End Framework for End-users in Construction

Scalable Parameter Design for Superconducting Quantum Circuits with Graph Neural Networks

A Survey of Event Causality Identification: Taxonomy, Challenges, Assessment, and Prospects

Neural Corrective Machine Unranking

Towards a Universal 3D Medical Multi-modality Generalization via Learning Personalized Invariant Representation

Differentiable Motion Manifold Primitives for Reactive Motion Generation under Kinodynamic Constraints

Zeroth-Order Fine-Tuning of LLMs in Random Subspaces

RUMI: Rummaging Using Mutual Information

Neural Machine Unranking

VolDoGer: LLM-assisted Datasets for Domain Generalization in Vision-Language Tasks

Unsupervised Concept Drift Detection from Deep Learning Representations in Real-time

A Multi-Faceted Evaluation Framework for Assessing Synthetic Data Generated by Large Language Models

DualXDA: Towards Sparse, Efficient and Explainable Data Attribution in Large AI Models

Quantifying the Uniqueness and Divisiveness of Presidential Discourse

DocTER: Evaluating Document-based Knowledge Editing

Learning Concepts Definable in First-Order Logic with Counting

Recognizing and Eliciting Weakly Single Crossing Profiles on Trees

Compliance Brain Assistant: Conversational Agentic AI for Assisting Compliance Tasks in Enterprise Environments

Learning Temporal Abstractions via Variational Homomorphisms in Option-Induced Abstract MDPs

When Autonomy Goes Rogue: Preparing for Risks of Multi-Agent Collusion in Social Systems

An Integrated Framework of Prompt Engineering and Multidimensional Knowledge Graphs for Legal Dispute Analysis

DisMS-TS: Eliminating Redundant Multi-Scale Features for Time Series Classification

Corrupted by Reasoning: Reasoning Language Models Become Free-Riders in Public Goods Games

Beamforming and Resource Allocation for Delay Minimization in RIS-Assisted OFDM Systems

Neurodivergent Influenceability as a Contingent Solution to the AI Alignment Problem

EducationQ: Evaluating LLMs' Teaching Capabilities Through Multi-Agent Dialogue Framework

SuperARC: An Agnostic Test for Narrow, General, and Super Intelligence Based On the Principles of Recursive Compression and Algorithmic Probability

IPCGRL: Language-Instructed Reinforcement Learning for Procedural Level Generation

OR-LLM-Agent: Automating Modeling and Solving of Operations Research Optimization Problems with Reasoning LLM

Chemical reasoning in LLMs unlocks strategy-aware synthesis planning and reaction mechanism elucidation

BEARCUBS: A benchmark for computer-using web agents

From Hypothesis to Publication: A Comprehensive Survey of AI-Driven Research Support Systems

HPS: Hard Preference Sampling for Human Preference Alignment

A Differentiated Reward Method for Reinforcement Learning based Multi-Vehicle Cooperative Decision-Making Algorithms

Retrieving Classes of Causal Orders with Inconsistent Knowledge Bases

On the Structure of Game Provenance and its Applications

I-CEE: Tailoring Explanations of Image Classification Models to User Expertise

SIDA: Synthetic Image Driven Zero-shot Domain Adaptation

3D Software Synthesis Guided by Constraint-Expressive Intermediate Representation

Moving Out: Physically-grounded Human-AI Collaboration

SynC: Synthetic Image Caption Dataset Refinement with One-to-many Mapping for Zero-shot Image Captioning

Approximate SMT Counting Beyond Discrete Domains

DRWKV: Focusing on Object Edges for Low-Light Image Enhancement

A general language model for peptide identification

Created by

Haebom

저자

Jixiu Zhai, Tianchi Lu, Haitian Zhong, Ziyang Xu, Yuhuan Liu, Shengrui Xu, Jingwan Wang, Dan Huang

개요

PDeepPP는 다양한 펩타이드 기능에 걸쳐 강력한 생체 활성 펩타이드(BPs) 및 단백질 번역 후 변형(PTMs) 식별을 가능하게 하는 통합 심층 학습 프레임워크입니다. 기존의 사전 학습된 단백질 언어 모델과 하이브리드 변환기-합성곱 아키텍처를 통합하여 설계되었으며, 포괄적인 벤치마크 데이터 세트를 활용하고 데이터 불균형 문제를 해결하기 위한 전략을 구현하여 전역 및 지역 시퀀스 특징을 체계적으로 추출합니다. 차원 축소 및 비교 연구를 포함한 광범위한 분석을 통해 PDeepPP는 강력하고 해석 가능한 펩타이드 표현을 보여주며 33가지 생물학적 식별 작업 중 25가지에서 최첨단 성능을 달성합니다. 특히 항균(0.9726), 인산화 부위(0.9984) 식별에서 높은 정확도를 달성하고, 당화 부위 예측에서는 99.5%의 특이도를, 말라리아 치료제 작업에서는 위음성의 상당한 감소를 보입니다. PDeepPP는 대규모 정확한 펩타이드 분석을 가능하게 하여 생의학 연구와 질병 치료를 위한 새로운 치료 표적 발견을 지원합니다. 모든 코드, 데이터 세트 및 사전 학습된 모델은 GitHub 및 Hugging Face를 통해 공개적으로 이용 가능합니다.

시사점, 한계점

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시사점:

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다양한 펩타이드 기능과 PTM 부위에 대한 강력하고 정확한 식별을 제공합니다.

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항균, 인산화 부위 식별 및 당화 부위 예측에서 최첨단 성능을 달성합니다.

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데이터 불균형 문제를 효과적으로 해결하여 신뢰할 수 있는 결과를 제공합니다.

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해석 가능한 펩타이드 표현을 제공하여 결과의 이해를 돕습니다.

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생의학 연구 및 신약 개발에 기여할 수 있는 잠재력을 가지고 있습니다.

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모든 코드와 데이터를 공개하여 연구의 재현성과 확장성을 높였습니다.

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한계점:

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33가지 작업 중 8가지 작업에서는 최첨단 성능을 달성하지 못했습니다. 성능 개선 여지가 있습니다.

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다양한 펩타이드 기능에 대한 일반화 능력은 데이터 셋의 구성에 영향을 받을 수 있습니다. 더욱 다양한 데이터 셋이 필요할 수 있습니다.

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특정 유형의 펩타이드나 PTM에 대해서는 성능이 저하될 가능성이 존재합니다. 추가적인 연구가 필요합니다.

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