Daily Arxiv

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Latent Retrieval Augmented Generation of Cross-Domain Protein Binders

Created by
  • Haebom

Author

Zishen Zhang, Xiangzhe Kong, Wenbing Huang, Yang Liu

Outline

RADiAnce is a novel framework for designing protein complexes targeting specific sites. This model leverages existing interfaces to guide the design of novel complexes, integrating search and generation within a common contrast latent space. This allows for efficient identification of relevant interfaces and seamless integration via a conditional latent diffusion generator, enabling cross-domain interface transfer. RADiAnce outperforms existing models across various metrics and demonstrates cross-domain generalization, demonstrating that searching for interfaces across multiple domains can improve the performance of complex generation across other domains.

Takeaways, Limitations

Takeaways:
A new framework for protein complex design is presented.
Successfully combining search-based knowledge with generative AI.
Superior to existing models in terms of binding affinity, geometric structure, and interaction recovery.
Demonstrated cross-domain generalization ability.
Presenting new possibilities in the field of drug discovery.
Limitations:
Limitations, as stated in the paper itself, is not presented. (Limited to the information provided)
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